Index

A

ag (openfe_analysis.transformations.NoJump attribute)

Aligner (class in openfe_analysis.transformations)

C

close() (openfe_analysis.reader.FEReader method)

ClosestImageShift (class in openfe_analysis.transformations)

D

dt (openfe_analysis.reader.FEReader property)

F

FEReader (class in openfe_analysis.reader)

format (openfe_analysis.reader.FEReader attribute)

G

gather_rms_data() (in module openfe_analysis.rmsd)

I

index_method (openfe_analysis.reader.FEReader property)

M

make_Universe() (in module openfe_analysis.rmsd) module openfe_analysis openfe_analysis.reader openfe_analysis.rmsd openfe_analysis.transformations openfe_analysis.utils openfe_analysis.utils.multistate openfe_analysis.utils.serialization

multistate_index (openfe_analysis.reader.FEReader property)

N

n_atoms (openfe_analysis.reader.FEReader property)

n_frames (openfe_analysis.reader.FEReader property) NoJump (class in openfe_analysis.transformations)

O

omm_quantity_string_to_offunit() (in module openfe_analysis.utils.serialization) openfe_analysis module openfe_analysis.reader module openfe_analysis.rmsd module

openfe_analysis.transformations module openfe_analysis.utils module openfe_analysis.utils.multistate module openfe_analysis.utils.serialization module

P

parse_n_atoms() (openfe_analysis.reader.FEReader static method)

prev (openfe_analysis.transformations.NoJump attribute)

Q

quantity_constructor() (openfe_analysis.utils.serialization.UnitedYamlLoader static method)

R

ref_idx (openfe_analysis.transformations.Aligner attribute)

ref_pos (openfe_analysis.transformations.Aligner attribute)

T

trajectory_from_multistate() (in module openfe_analysis.utils.multistate)

twoD_RMSD() (in module openfe_analysis.rmsd)

U

UnitedYamlLoader (class in openfe_analysis.utils.serialization)

units (openfe_analysis.reader.FEReader attribute)

W

weights (openfe_analysis.transformations.Aligner attribute)